Scaffold Ga0061012_12620292

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0061012_12620292

Scaffold Ga0061012_12620292

Overview

Basic Information
Taxon OID	3300031117 Open in IMG/M
Scaffold ID	Ga0061012_12620292 Open in IMG/M
Source Dataset Name	Coassembly of Cow X Rumen Fluid
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1600
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Unclassified → Fungi-Associated Bovine Rumen → Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis

Source Dataset Sampling Location
Location Name	USA: Illinois
Coordinates	Lat. (^o)	40.102108	Long. (^o)	-88.227299	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F064301	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0061012_126202924	F064301	N/A	MAKTKGTSRGVIIPTKVQPIWQIGMLFPDGKKISKPKCTLNEVFETYFMSLDKYSSKGYSPEQLLELYQKTYYSKGIKIQINYIDSWGHTWKGKVA

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