NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308197_10064274

Scaffold Ga0308197_10064274


Overview

Basic Information
Taxon OID3300031093 Open in IMG/M
Scaffold IDGa0308197_10064274 Open in IMG/M
Source Dataset NameMetatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)991
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033492Metagenome / Metatranscriptome177Y
F046940Metagenome / Metatranscriptome150N

Sequences

Protein IDFamilyRBSSequence
Ga0308197_100642741F046940N/ANYLTQTKLNVNMFTADLAVQPGDSGSPVFALQGGQPVLIGLVSATMYPTATFTYVARIDPLLALADALRLAISGQSKSLLVRSPATASPEQH
Ga0308197_100642742F033492AGAAGGMYSIYGKTLGMAMAALWVMFTSIQPVPLTTANYPTLLHPPAAYVALWSQSEEPVSVELRVPEALVNALRTEECSSKTLDLRVPEALLEHLYGAGEVSGLEKSPASWDEPF

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