Basic Information | |
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Taxon OID | 3300031090 Open in IMG/M |
Scaffold ID | Ga0265760_10050002 Open in IMG/M |
Source Dataset Name | Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1258 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests |
Source Dataset Sampling Location | ||||||||
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Location Name | Norway: Oslo | |||||||
Coordinates | Lat. (o) | 59.9979 | Long. (o) | 10.7895 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005312 | Metagenome / Metatranscriptome | 405 | Y |
F009363 | Metagenome / Metatranscriptome | 319 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0265760_100500022 | F005312 | AGG | VVTYRAGDIVLPATGNLAADSGKSIFLEESYQQQGNVKTFRWEIPYPCIVELNECPEIPRPSASVQEPREASAESARQPGALELKNRPA |
Ga0265760_100500023 | F009363 | GGAGG | LAVRICPHCKTEIPAPEAAARSNDIECPKCGMRLEVAPGSRTISSLAGLAAGAIAWRLSADSTTDLGGVLPTLYAFLAFGIVSPLVLMFTANLRNAPALPIPEPAHAPASAGQGAAGHGGGHH |
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