Scaffold Ga0265760_10000724

Overview

Basic Information

• Taxon OID: 3300031090
• Scaffold ID: Ga0265760_10000724
• Source Dataset Name: Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9406
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Norway: Oslo
• Coordinates
  • Lat. (^o): 59.9979
  • Long. (^o): 10.7895

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008518	Metagenome / Metatranscriptome	332	Y
F010569	Metagenome / Metatranscriptome	302	Y
F065983	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265760_1000072413	F010569	GAG	MVKALSAKGVARAPRVKLAGTVLSLVRLENGRQTRGKLHQLSITGGLLHMETPLDEGIKVELIFHVGESTVRTPARMLFPMWATQGCLQPFEFSGLDEEDRCNLRVDLERLLDGSTDASVPAQEENSEASPDS
Ga0265760_100007245	F065983	GAG	MKKRLTAPEKLYVERRREHNRKHTLLRRECYKWLRKNLPEVYEKLRRKAGLAKTGRPKD
Ga0265760_100007247	F008518	AGG	MSMWMEKLSFGVLRVLTPLGPRYLNPSFAQRLYLLWIFRNFETLPVKVLSQRQQRWVDAMCASHGFVSVLEPNGLMDTPLLGTLEQRPPVTPSRRPDRSVSDAVSPFAADSQRS