Scaffold Ga0265760_10000011

Overview

Basic Information

• Taxon OID: 3300031090
• Scaffold ID: Ga0265760_10000011
• Source Dataset Name: Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 101607
• Total Scaffold Genes: 98
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 80 (81.63%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Norway: Oslo
• Coordinates
  • Lat. (^o): 59.9979
  • Long. (^o): 10.7895

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001450	Metagenome / Metatranscriptome	692	Y
F002623	Metagenome / Metatranscriptome	542	Y
F011314	Metagenome / Metatranscriptome	292	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265760_1000001158	F011314	GGAG	MTNVKLHAGYAVQLAGLVALAVGAVLSAHHLAIGASLLGGAAALHVGKIIRTVTF
Ga0265760_1000001169	F001450	GAGG	MTEVMRESKQAPESIRNAVTRAGGLNRYGEPNFRVVWGWSRLAWIGGKWRDTNAEGELLREVIELRQEPKYTPHDRWHVERWVPPEAYGSPEQWYEQTSEFENGVLLPALGPYPARGDYEHSFTLEGPQREFLALTPAICDAVVRAVEWSRGTSATEKRAALVAREERITQKWESDASNALGM
Ga0265760_1000001182	F002623	GAG	MQIRQYTSADCEALRRIHARQGFEYEFPNIDDPLFVSKIVLEDDAGLVAMAALARLTCEMYLLMEPEKGTARQRFERLLFLQRAGAEDLRARGLHDAHAWLPPPIGRRFGRRLEAMGWTRDDEWTPYSIRFAR