Scaffold Ga0073961_11297892

Overview

Basic Information

• Taxon OID: 3300031063
• Scaffold ID: Ga0073961_11297892
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E6_Q_5 metaT (Eukaryote Community Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 799
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070841	Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073961_112978921	F070841	AGAAGG	MNSCSFSCTKDLHGHGVLGFYGSKTSLDTPGPGAYDPYPFLNPPAQRMRRTKSLPDRAPGFVNVVDRGIQKWRPEPFSVSRVQSEQPLVHYASATFWDWPAQRRQFEERRMMPTNRRSSNPGGGFGRRMSQDSGSSDFDPELPRAPTGLAPPGLAGKRWHGREDPAPKQSRGQLEDLTQLKRGGTSTSLPSLMQQGRSRLASDGLYPVGEEEDD