Scaffold Ga0073989_10006102

Overview

Basic Information

• Taxon OID: 3300031062
• Scaffold ID: Ga0073989_10006102
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_S21_0.2 metaT (Eukaryote Community Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 989
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates
  • Lat. (^o): 6.5
  • Long. (^o): -48.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031880	Metagenome / Metatranscriptome	181	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073989_100061021	F031880	N/A	GQMKNLITDKPAPITVKLAQTTGDGDNVFKLMDENVTKGQMKNLITDKPAPITVKLAQTTGDGDNVFKLMDENVTKGQMKNLITDKPAPITVKLAQTTGDGDNVFKLMDENVTKGQMKNLITDKPAPITVKLAQTEATGDGDNVFKLMDSNVTKGQMKNLITDKPAPITVKLAQTEATGDGDNVFKLMDSNVTKGQMKNLITDKPAPITVKLAQVETGAF