Scaffold Ga0074029_1554826

Overview

Basic Information

• Taxon OID: 3300031051
• Scaffold ID: Ga0074029_1554826
• Source Dataset Name: Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Humus C1 (Eukaryote Community Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 832
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location

• Location Name: Sweden: Dalarna County
• Coordinates
  • Lat. (^o): 60.97
  • Long. (^o): 15.87

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009513	Metagenome / Metatranscriptome	316	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074029_15548262	F009513	N/A	MFDMILENYRKATESTMKLQQDVLRNWTMQWPQMFGTQTLGLPFMGGQGSGSVMPGAAWLAQLSDAQKKWGETVTDMLNKHRESLDAQYKAGIRTIEEAFKVGDAKDPQQFRRLTEELWKHSFECLKTVAESQTRDVQAAMEKFYEVASKSVSGLKV