Scaffold Ga0265779_100056

Overview

Basic Information

• Taxon OID: 3300031043
• Scaffold ID: Ga0265779_100056
• Source Dataset Name: Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZA6 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3483
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Norway: Oslo
• Coordinates
  • Lat. (^o): 59.997
  • Long. (^o): 10.7902

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007465	Metagenome / Metatranscriptome	350	Y
F009513	Metagenome / Metatranscriptome	316	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0265779_1000561	F009513	GGAGG	MFDMILENYRKATESTLKLQQDVLRNWTMQWPQMFGTQTFGLPFMGGPASGSAVPGAALLAQLSDAQKKWGEAVTDMLNKHRESLDAQYKAGIRTIEEAFKVGEAKDPQQFRRLTEELWKHSLECLKTVAEAQTRDVQAAMEKFYEVASKSARV
Ga0265779_1000563	F007465	AGGAG	MPSTESKTEPDSSVATTDPSTLIASFWTQWLEQSTRGTQALLEAMQGAGDPQLLHRRWIDAVSRSLDDFMRTPTFLQLLGNNLKAVTDMKGMQDQVIQDTARHFGMPLAADITGLFERLHSTEQNIINRLQAIEERLKAIETKH