Scaffold Ga0073979_12238975

Overview

Basic Information

• Taxon OID: 3300031037
• Scaffold ID: Ga0073979_12238975
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_S2_5 metaT (Eukaryote Community Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 552
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates
  • Lat. (^o): -38.0
  • Long. (^o): -45.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016242	Metatranscriptome	248	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073979_122389751	F016242	N/A	ENAEFQTVVADQRATQVILKKALSRLEDFYKKGKGNKLVLAEQEPPVKFNSYKKNAGASPVMGLIEQIIEDSEKLVAEATEAEYKAQGEYEKFVTDSNAIIKELSKDVEVKTKATATAKGETAEAKGDHENAVGELESLAEYDADLHGECDFVLKNFDIRQKARLQEMEAIQAAKGILSGAK