Scaffold Ga0073998_10036551

Overview

Basic Information

• Taxon OID: 3300031023
• Scaffold ID: Ga0073998_10036551
• Source Dataset Name: Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil TCEFA (Eukaryote Community Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 647
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Rhabditina → Rhabditomorpha → Rhabditoidea → Rhabditidae → Peloderinae → Caenorhabditis → Caenorhabditis elegans (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location

• Location Name: USA: Montana
• Coordinates
  • Lat. (^o): 46.9233
  • Long. (^o): -110.871944

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015430	Metagenome / Metatranscriptome	254	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073998_100365511	F015430	AGG	MFSAVVIFFAASFALALSSTPCLPEQTGIYWKGVCDGQTFQNKIDTMNMTVTQGGKPVDENGGLNLEIGIDILATIKNNYGPTTTPVVDLAIFEYSKPIFGGACSWKALPTFGLLNNIDACTMIENCHMTGVPTTLKASVDVKKIAGPLLHLVTKDAYYGLTLTFKDKQIPLNCVYIQDKVHVV