Scaffold Ga0308178_1001772

Overview

Basic Information

• Taxon OID: 3300030990
• Scaffold ID: Ga0308178_1001772
• Source Dataset Name: Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_149 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2145
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location

• Location Name: USA: Colorado
• Coordinates
  • Lat. (^o): 38.9206
  • Long. (^o): -106.9489
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013869	Metagenome / Metatranscriptome	267	Y
F016640	Metagenome / Metatranscriptome	245	Y
F025222	Metagenome / Metatranscriptome	202	Y
F055478	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308178_10017721	F025222	AGGAGG	MLAFDAMEPEHMAFLYELYTRSAGDARQGVPYEVLIDALGFDERVTKRIQHEFQREGLVDLTTVPQMTTVSRTVMDCVRQQHHQQTIAMTPQGVQLMEDIFATRVDTARPTPSTSPPA
Ga0308178_10017722	F013869	GGAGG	MTIAKVLAVYKTAPIVLVVESAEGTVCELSLTDLHGTGHRLSDDACASLVEDYRLFTCQPAAD
Ga0308178_10017723	F016640	AGGAG	MISIIFIVVVIAGAGYLAWRRWTYWRTPISSQSSAERSPQTRAFEAFADGNRCLMAGQWPDATVAFERARTLDPKRPYVAERLAEVARQQHTASAPAPVAVGG
Ga0308178_10017724	F055478	AGGAGG	MNPIMTQPGTREDLPRWGMRGMEDLTVEALARLQQKRDGWIRQRAHNPGRPRRRP