Scaffold Ga0315886_110212

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315886_110212

Scaffold Ga0315886_110212

Overview

Basic Information
Taxon OID	3300030983 Open in IMG/M
Scaffold ID	Ga0315886_110212 Open in IMG/M
Source Dataset Name	Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T33 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	679
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Plant Litter Microbial Communities From East Loma Ridge, Irvine, California

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.7417	Long. (^o)	-117.7042	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010295	Metagenome / Metatranscriptome	305	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315886_1102121	F010295	GAG	VLGHLSSDGSGLSVTEVGGVVFALNTFSDLFSVSLVDDSQVLSDGLSDDSDLAELGGGGTTSDLEGSKTVEFLLVLFESLDEFVVGDGSKLENSELLVGHLMRTCEC

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