Scaffold Ga0068589_10159784

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0068589_10159784

Scaffold Ga0068589_10159784

Overview

Basic Information
Taxon OID	3300030979 Open in IMG/M
Scaffold ID	Ga0068589_10159784 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from France, for metatranscriptomics studies - Site 11 - Champenoux / Amance forest (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	524
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location Name	France: Mazerulles, Grand Est.
Coordinates	Lat. (^o)	48.7585	Long. (^o)	6.3578	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023692	Metagenome / Metatranscriptome	209	Y
F038346	Metagenome / Metatranscriptome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068589_101597841	F023692	N/A	AIVAVVAFTAWSVEPTVGKTPSTVSLDPQGMMVNTTNLPQAQYVDYSTIF
Ga0068589_101597842	F038346	GAGG	MNKQWEPERSRIEHADDARITFTIALQGEHAWEMLLEDSHRYHSISHGWATEDPHDWEKAIAPVLRRLFASGRLA

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