Scaffold Ga0073971_11246278

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0073971_11246278

Scaffold Ga0073971_11246278

Overview

Basic Information
Taxon OID	3300030958 Open in IMG/M
Scaffold ID	Ga0073971_11246278 Open in IMG/M
Source Dataset Name	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E6_X_5 metaT (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1635
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Noctilucales → Noctilucaceae → Noctiluca → Noctiluca scintillans	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location Name	Southern Atlantic ocean
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058162	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073971_112462781	F058162	N/A	LQRRKVASHLERLIRTTMVVIRVGFICGKDTDFVEHPGKGPRYASIGDASFLSDLPDKWRVDPNSKEYLMDCEPGTKGQAHCDVALAWYIKKNYQDIEVDIITPEELTVKRLHSNDLNFTMGYNAVNIKVENNASGAAKMRAFTKAKNIFPTWEAEEYILHKSKYMQACMDAGVPMAPTIFAIKGKRSPAQLMAQIKERGWKTFVMKQSESGFSLGFCKMTVEQCDNDPSILATYFKDWSHCPEFIVQEAVEGFTRNWETRCFWFNGKFLYAIANMAAVSAKDSKERIVTGNDIPKEFLENAKRIGQQAIRVLPELQTGGAPVKNVLVRTDVGCSDSQLYDKYTNWDPSKRTFFLNEIEPSSTTYFVRWLKFDCIPMYAKLYVEKAREIYKATKGEQIRKVPTPARSTPVKGKTKPPVSTPVKAKTKVAVSAKVLKTGKLKAKK

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.