Scaffold Ga0138348_1187706

Overview

Basic Information

• Taxon OID: 3300030924
• Scaffold ID: Ga0138348_1187706
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E5_V_5 metaT (Eukaryote Community Metatranscriptome) (version 2)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1120
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F085096	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0138348_11877061	F085096	N/A	RVSLPQFYPRSFFRTMLRLLLLMPALCTSTHMPQWLKEKIKNADLSDNYDTCNSTLCEQPARAYTKMLPMQPGVQWMQHGGYCGAWSVQRAVLAKGAYISQQQVRDHAKFGGGHDEEILNTNIDGALERLKIKAEDFNFNSLPTPQSDAYLRFMKKHLVADNPVIWMVMFGGDSYPDPGYTMDNQTNGVYGHIEPVVGIMSDNPLTDEAVHDDDIFAYFDDASKQTFYATASKVAGTCNFGDHKTCRASCPTGLFGMGQCVWKQRGYIYAIQDFADEHDAVPASLSISPFASEPYTRGGEQPIEITATLTAVGLKTGSKYDIYRWDSAEDAFVYNDANKIETFTASEETHIFEDPTKLLSNSATYYRVVPAS