NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074033_10065865

Scaffold Ga0074033_10065865


Overview

Basic Information
Taxon OID3300030909 Open in IMG/M
Scaffold IDGa0074033_10065865 Open in IMG/M
Source Dataset NameMetatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Mineral N2 (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)860
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameSweden: Dalarna County
CoordinatesLat. (o)60.97Long. (o)15.87Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F096485Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0074033_100658651F096485N/AAFAGATAIPNDGQIHEFPLGCNGHGRIAFGPNDPNINGWYAGQQVYSLVEPGPDGNCGSMNYDTSYIDTGILMPLGVRAKPCNTQSECKVSYVALNESAPSQWVKYYGTESYFLSYARYCSEYNTCDDLRATAKKLSQAIGACADSSVDSRPIAEIAGCGGGPWSASSSCCSAVNFGLVDYIINNNKWSAWNSGSDCDTFYQYKYTSAFNHYQQWIENVCQVKYQYGFPYADHCGWSSDIGCSNSHQMDIIVCPQG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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