NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265764_105091

Scaffold Ga0265764_105091


Overview

Basic Information
Taxon OID3300030882 Open in IMG/M
Scaffold IDGa0265764_105091 Open in IMG/M
Source Dataset NameMetatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI6 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)730
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameNorway: Oslo
CoordinatesLat. (o)59.997Long. (o)10.7902Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034933Metagenome / Metatranscriptome173Y
F093895Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0265764_1050911F034933GGAGMTGRESQAMSAEQSVGKAGREVKGEEQSEPETEGQVSGTK
Ga0265764_1050912F093895N/APELLVPTFSTSHRSGITPCSTLASCAIHGVLRGRHRMPVLAADCSAINPLALRPAHELLRARHLAFRFVPGLLLARRFPPCVEPGFLRVQPSRSVSSSDFSALVPSRFATLTDCSVHVAWLLVSRPERSVLSTSTRSCPPITRCATLCASHRSRITSCPTLDLPSPAQIAPRL
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