Scaffold Ga0265753_1000274

Overview

Basic Information

• Taxon OID: 3300030862
• Scaffold ID: Ga0265753_1000274
• Source Dataset Name: Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2979
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Norway: Oslo
• Coordinates
  • Lat. (^o): 59.9989
  • Long. (^o): 10.7903

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004122	Metagenome / Metatranscriptome	452	Y
F015781	Metagenome / Metatranscriptome	252	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265753_10002744	F015781	AGG	MNSVVDTIVAAPASSEAQLRSRVLEIRPEESKLVCVGADGREFALSRLIGSNVRVGDELLAPASAGTAIADT
Ga0265753_10002745	F004122	N/A	MTENGLWDSGCRSAELRYEWQSFLGLLPVLDLRPTDLVLYQRCQTAVWRSRKSAISRTDLQRAAGLGFQAETLGFDLLIAQLVRDRILEPIVSSPFHFQIRRWNWTNPESVYAADDRLSLIAISREEQTARFRMVGLLSARILNPRLPQKRVQQIRKERDELERIYEATWMELENAIGSKAAEAIRKSVEETTEAGAVQLELPLEKKRTFDLEGEAKCNQ