Scaffold Ga0265726_101609

Overview

Basic Information

• Taxon OID: 3300030824
• Scaffold ID: Ga0265726_101609
• Source Dataset Name: Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLU2 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 810
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Xylariomycetidae → Xylariales → Xylariaceae → Rosellinia → Rosellinia necatrix (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Norway: Oslo
• Coordinates
  • Lat. (^o): 59.9982
  • Long. (^o): 10.7894

Associated Families

Family	Category	Number of Sequences	3D Structure?
F093895	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0265726_1016091	F093895	AGG	LLVPTFSTSHRSGIAPCSTLAFCAIHGVLRGLHRMPALLADFPAINPLALCPAHELLRVRHLAFRSVPGLLRARRFSPCVEPGLLRVQPSRSVPSPDRSVLFPSRFASLTDCSVVDAWLLVSRPERSVLLTSTLSRSPIARFATLCASHRARITSCTTLDLPPWAQIAPRL