NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073967_11846152

Scaffold Ga0073967_11846152


Overview

Basic Information
Taxon OID3300030750 Open in IMG/M
Scaffold IDGa0073967_11846152 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E6_T_5 metaT (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)915
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005140Metatranscriptome410Y

Sequences

Protein IDFamilyRBSSequence
Ga0073967_118461522F005140N/APQTEGTMKLMEKMVNEVNTHRLKSDCFGESNKKAYDLAIEGAMEKCMQLAPAFNLLNMLPTNDYTRGTPFDNIQFSNLENLVSLWRTKRDTGLVNVDEDDFIEFLGDLGDYKADMASKMGNLTCVLTELKLLTPEMKVNIEEFTKDAAEIEGFDLEASPLAQDPEWWKRLVTGYQDCYDISESIPQSALNKHPLKKMFGRQMMFFKCAEKNDRMNCALGQMKMWLESHYADSGRDMSEYGLPEDQYEASGLTLMVKYSAASDEEKFLSNFFWGAKW
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