Scaffold Ga0265459_11534690

Overview

Basic Information

• Taxon OID: 3300030741
• Scaffold ID: Ga0265459_11534690
• Source Dataset Name: Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ANR Co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 763
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location

• Location Name: Canada: Quebec
• Coordinates
  • Lat. (^o): 47.2662
  • Long. (^o): -71.2166

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002337	Metagenome / Metatranscriptome	569	Y
F099706	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265459_115346902	F002337	GGAG	VNLAIIIVISAVLALGIIVRLAIAQSLQARRSANLAATIYPIDIVAFRNLIDPAEDDYLRRRLPSAQFRMVRRERLRAMAAYVQVAGRNAAVLVRMGELAVASGDARVAEAAHQLVNDALLLRRNATVALARIYLALAWPYSEFAAVRVVDRYERVSGSAMLLGRLQNPAVPVRLSAQL
Ga0265459_115346903	F099706	N/A	LCVMIWFYYLVVPHKSAITSAAQLPDNNLAIWNRELERLLQK