Basic Information | |
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Taxon OID | 3300030741 Open in IMG/M |
Scaffold ID | Ga0265459_11534690 Open in IMG/M |
Source Dataset Name | Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ANR Co-assembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 763 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Quebec | |||||||
Coordinates | Lat. (o) | 47.2662 | Long. (o) | -71.2166 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002337 | Metagenome / Metatranscriptome | 569 | Y |
F099706 | Metagenome / Metatranscriptome | 103 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0265459_115346902 | F002337 | GGAG | VNLAIIIVISAVLALGIIVRLAIAQSLQARRSANLAATIYPIDIVAFRNLIDPAEDDYLRRRLPSAQFRMVRRERLRAMAAYVQVAGRNAAVLVRMGELAVASGDARVAEAAHQLVNDALLLRRNATVALARIYLALAWPYSEFAAVRVVDRYERVSGSAMLLGRLQNPAVPVRLSAQL |
Ga0265459_115346903 | F099706 | N/A | LCVMIWFYYLVVPHKSAITSAAQLPDNNLAIWNRELERLLQK |
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