NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302310_10157173

Scaffold Ga0302310_10157173


Overview

Basic Information
Taxon OID3300030737 Open in IMG/M
Scaffold IDGa0302310_10157173 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1360
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027716Metagenome / Metatranscriptome193Y
F058413Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0302310_101571731F058413N/ATPVVAPGFADSTDQFTFGVNWYLNYWVLVKSEVSLDRLKDPSVQGILPHNFYVFLETFQFRF
Ga0302310_101571732F027716GGAGGMKTKMVPLRNLAALFGMLFLLNSCGGGQSGCPVCGTQTNGPIGLIDVMLVPEHNPNGEPGGPFNIFDISWVDPVTDIALWAIGGDNSIAEAGDNASSCWVDTSTSATAGETIPSLTSAQGNYTRFGCKTNGFRLPGFFGPNGHFGGFVGGQCCASRSNNLNPLSGPNGMEVSGDGNFLFVGNGSSVMLVFDLDGPTGVTGCMASANGRAFSDPSCGDLRGDEIATTGGVVKFPQDGSSRYLVAIINGDPGLPFVSIIDVTGIVTRSTNNQLAHCLPYASATFTSADAGTQAPYSPGGPFSTFPANYASCILGQIYYDGAAQNDDTVLIDDGGANGPVGSPAF
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