NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307482_1214704

Scaffold Ga0307482_1214704


Overview

Basic Information
Taxon OID3300030730 Open in IMG/M
Scaffold IDGa0307482_1214704 Open in IMG/M
Source Dataset NameMetatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)590
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034577Metagenome / Metatranscriptome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0307482_12147041F034577N/AVPSDFRAASLIAGMHGTKLRIMKRRTISPPDSTATVFAGYGFIALRRAECIFITGPLARAGVSLARSGFRLREFRSGVKGPHLTLRSLTNRLILLVRPFGSATCRWFAPAAGCIHASDPLHSCQSVLPAARPISTPLQEFSLLPDQSVRLVTRPSGPPSRSARSPFAPRSLSISSWATDQSSRSATFPEACCSSNL
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