Scaffold Ga0308131_1032749

Overview

Basic Information

• Taxon OID: 3300030729
• Scaffold ID: Ga0308131_1032749
• Source Dataset Name: Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB21_1108_32.2 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1088
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.0136
  • Long. (^o): -139.5971
  • Depth (m): 139

Associated Families

Family	Category	Number of Sequences	3D Structure?
F073422	Metagenome / Metatranscriptome	120	N
F077940	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308131_10327491	F077940	N/A	FKDTMAKRTQQLNLPSEIAEIAQSAAPVAVVAPEVTPDQIAQLILKGSDNTKAAIRKALDLDKTHARVRKNKNQTNSQVRNTVKAIGEVTHADDYVPDPPGRISDRGPEAVRIWQERWLDNNGDNLSEYDLDHMALEAQE
Ga0308131_10327493	F073422	GAGG	MTNLEVIQTALRRVGLNSNASTFKDGARTYLNMVGKDVQSREKWNWLFKASTFNTVADTQTYSLASNALTPLSFRNTTEDHVIIVMSSQDLDAADPNHSIGGDPRWVIIDGVDSNGLVQVSLYPKPDSVDTIAYRYYASV