Scaffold Ga0308138_1030936

Overview

Basic Information

• Taxon OID: 3300030724
• Scaffold ID: Ga0308138_1030936
• Source Dataset Name: Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB4_949_20m (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 761
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 75.0007
  • Long. (^o): -150.0027
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045552	Metagenome / Metatranscriptome	152	Y
F087017	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308138_10309361	F087017	N/A	MLKITNTTTEKDGTFGTNTNYTVKGSVALALDSIWDYDGKVDVDVTGIQVYTHYDDDGVTESNVDVNVTHNADWNIYTDSGFESAISNLLGFDVTFTEQGMQDDGYASMEV
Ga0308138_10309362	F045552	GAGG	MQTFTQHEKDFVVEFLADVLHGLTINNVLSRQEGNGFIRMADAQEVLGNLEMLYNKHDDEEDFVLNETNATWTFTLDDAQTALRSYDTEYRDCIVEQFEDACTDALADA