Scaffold Ga0308129_1002250

Overview

Basic Information

• Taxon OID: 3300030723
• Scaffold ID: Ga0308129_1002250
• Source Dataset Name: Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - AG5_1301_Surface (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1912
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Mamiellaceae → Micromonas → Micromonas commoda (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 70.5467
  • Long. (^o): -122.9077
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F075610	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308129_10022501	F075610	N/A	MRTFVFLMMMLAASTLSMITPTSAQQNDDEKQTMVDHDGTDHYSSRSVRLSSDTTNIGSNERKILIENDYEVTYGTYFKIVRMKCGFDHAVKNPGKCTKNTYVLRKRGTDVPTIDPNTNEMIELVSEDGTETRHFEIPATSIAVGGTFALAYLEALDVDAETLKLIDSQYMHSPCMQLAVQNGEIIDHAYAVYGADWSVDTTAWSAKCDELNVDLTFTDEYGTGKCGNREAVNVLFHGNADDTAILRAEWVKFVSLFFDKEQFANEYFALESDAVEAIKTYVEKGIVASLSEKKTCVWVQKMGSYYEILHDTFRTSLCVDAGMLAYQGEAGFLKKAFAIDTQMEAFHSAIRDYDVVVDESYFYDVSSLNRSAYESNLAFDQLSGQTIKAKEGNGGLLLRVDASRGNGMTDDLKESGEVRPALLLNDLVTNVYGGTLSNDDACPKYFRNADESAIYVTHENCAALENADNEKKCVTDLKEEAERKTPSALFADSSAITTRDAIVATFGVSIATALSVLFAIA