Scaffold Ga0310038_10014768

Overview

Basic Information

• Taxon OID: 3300030707
• Scaffold ID: Ga0310038_10014768
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5033
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001953	Metagenome / Metatranscriptome	612	Y
F080280	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310038_100147682	F001953	AGGAGG	MKRLGLLLLAITQMLAGNAFAQNVGDNSVYFVAYYSNANTAGAPDAVVRVVNDGSGYAVDGTLANSAPVGVAGGILNAAIYVFDDSQELRSCCACPITPDGLLSESVNNELTSDTFTIHGEFSRGAIKVISSSSSDPTNPVPYPGLRGWATHIEATTNTFPAPGPGHAVNVKEAGPWFVDETALADSNLSAIELYNLGTVCGYGLTLASGYGLCPCTLEDYDF
Ga0310038_100147686	F080280	N/A	YEIESKLRELKRANPPAEPLPAEPKEHRKNDTSGQPEQRQDRNYSQEYSQPVLAALRDATPAAAATTNRRFV