Scaffold Ga0311345_10676967

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0311345_10676967

Scaffold Ga0311345_10676967

Overview

Basic Information
Taxon OID	3300030688 Open in IMG/M
Scaffold ID	Ga0311345_10676967 Open in IMG/M
Source Dataset Name	II_Bog_N2 coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	836
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Abisko, Stordalen Mire
Coordinates	Lat. (^o)	68.3532	Long. (^o)	19.0477	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003764	Metagenome	469	Y
F038518	Metagenome	165	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0311345_106769671	F038518	N/A	QADLEDVNYNLSVVTMHQLASREGKIDANWWDAALRFGMLDLDEEPAYRLGSYPVKVVRWIRHLIFALHAERRDVQLAIAELEPKVAALSQIIGDTIK
Ga0311345_106769672	F003764	GAG	MQIQDDSTYVLDENPAAFLAGAEIEAAALHRCLKIVCLWNQSSSLPRSRRDELIEEEQRLANLYAATLFEIGSAFGIDKADELKVRAEAACILDVWECPPAEQGLLFPIPSDAAAVASPPAARK

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