Scaffold Ga0316363_10356300

Overview

Basic Information

• Taxon OID: 3300030659
• Scaffold ID: Ga0316363_10356300
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 575
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003000	Metagenome / Metatranscriptome	514	Y
F069590	Metagenome / Metatranscriptome	123	Y
F083628	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316363_103563001	F069590	N/A	VAHAEAEADDLHPGETTQGVVSIRQGLKSPAVVQLVFGDGVKATVVL
Ga0316363_103563002	F003000	N/A	MKANAQLGKMHDRLIEGYIQNPKERFCDALLRLVEDPLKPRDKDGRFRVNPILLLLTLVLALALGTFLLLSFVQS
Ga0316363_103563003	F083628	GAG	MTAENEYRLGRRAFHENQEESVAVVIAIVAVILLAGGSYILVNRFHVRSVQLVEGSLYAFFALVAGIS