Scaffold Ga0316363_10024009

Overview

Basic Information

• Taxon OID: 3300030659
• Scaffold ID: Ga0316363_10024009
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3240
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003859	Metagenome	464	Y
F016631	Metagenome	245	Y
F027079	Metagenome / Metatranscriptome	195	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316363_100240091	F016631	GAGG	MNRLTNLALSVGETLFHEAGRLLFGIALGAAKQALGTPQPLGTSQLAFPRALQRKTIDGALLAGPRTQQEYAKFALKKGLPTEQRPRRLAVENEPHSVDDFNGVIEEGYGKGQKKLIYSGTGVIKVGGTCQLGKINVHAHKAEKAGFHYDFVAEGVDQHTQSFEVNIANGVLRGRYAFRQAFEKNRYLVVRLKDNSVLVAKPDIHLNPPEFLKTISQSDRPVSVEWKDDGSLANVAIHNLRAVYRSHRPEGEPYYDKLPAIEDVSNHSPVWLARRLFPGPEQEGTLLRGELHHPDGAARVGGIVNALPQKAIQIQRERGPVKFY
Ga0316363_100240096	F027079	AGGAG	VIKSFLNLCLLLFLDMLAYMVAIAAAAAVAWAAVCGARWIFAALRNSVMSLRRRWRKKEMCAHATR
Ga0316363_100240098	F003859	N/A	MTNVASSWPGASLYKSLKHGWQWRRLKWAVAAASEATQGHEANGVRPGAQEFKTLYDEVATRVQRYSGEASVPIDTLKAKLPALCAIERLANPETSVPQNRLGLTLGVVIASVLGSIGIGVLIGLGTGMAHWIARLFA