Scaffold Ga0187743_1079933

Overview

Basic Information

• Taxon OID: 3300030651
• Scaffold ID: Ga0187743_1079933
• Source Dataset Name: Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium from Pennsylvania, USA - 18_T2E_8DEL1 developmental time series (Eukaryote Community Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1327
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Metatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania
• Coordinates
  • Lat. (^o): 40.7982
  • Long. (^o): -77.8599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001767	Metagenome / Metatranscriptome	638	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187743_10799331	F001767	GAG	MLSVQKNNENRSLKTNRLFPTPNKPDPMPQNLAFLFTKITPEQMIYMWNVLTAIFFTQVLMVIGYCGALACFPDYWWTCTLCFGIPFSYIAIQNIYIDHDVMHGATFPVYEWQRFLTHPFADFFSLPWEEFVLEHNRHHASTVDLLIQGEFGWDPEEFHYALQQWAGPWGSNWYKYLLTVPFIPVIHFFGLNDTGSLFALEWWMHFPDEGAGGKCNKEFWSKWVPRRIKHNAFVLGLWACVWLLGTYPLGRPLSEGWRFMLTVSVFARIGYSAAWMFITNFTHSLPWNEFLAQDPGRTWPVLHNIMAMVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWKPNGDEETQMQKTQKKRS