Scaffold Ga0187745_1100543

Overview

Basic Information

• Taxon OID: 3300030639
• Scaffold ID: Ga0187745_1100543
• Source Dataset Name: Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium from Pennsylvania, USA - 20_T1F_StrEL1 developmental time series (Eukaryote Community Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 556
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Suessiaceae → Polarella → Polarella glacialis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Metatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania
• Coordinates
  • Lat. (^o): 40.7982
  • Long. (^o): -77.8599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025035	Metagenome / Metatranscriptome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187745_11005431	F025035	AGGAG	MHGDTVYVKVMTGRYIGELDGTTKLEWVKARGTKKDKEHALTVEKMNNRDEPIKNGDVVMFVMPQGVHMDVLGSAVRARYYDPRGEWQKITIVKQDGGDVYSGDQIFLRGHQGEYLDANPLERAPDGEVKARWRDEGEWQVMWIEK