NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311354_10129055

Scaffold Ga0311354_10129055


Overview

Basic Information
Taxon OID3300030618 Open in IMG/M
Scaffold IDGa0311354_10129055 Open in IMG/M
Source Dataset NameII_Palsa_E3 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2787
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021139Metagenome / Metatranscriptome220Y
F069114Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0311354_101290553F021139N/AMKRITLRQATRDDWPRILELHREHQAAQGTNYELPWLFGPAIAIALVGVEESGTIRNCIYVETIAELRFVGCDPKATAFSRREIEGLSYVLKLQGFRWLECFVPRQLKKMIQKPLQRAGFDCVDRELAHFAKDLRGNK
Ga0311354_101290555F069114GGAMTDHQDDEASRLLKQIMSPAEAQSLVLPPPDHAPVSGPGESTPLTGNLAKPPSQATPSRQGLAGYFAGGSTAANDRSSDPLYIKVSSKGQVGYLPRANLLQAIQIDNNLKVLD
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