Scaffold Ga0210278_1142322

Overview

Basic Information

• Taxon OID: 3300030596
• Scaffold ID: Ga0210278_1142322
• Source Dataset Name: Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO135-VCO085SO (Eukaryote Community Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 582
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location

• Location Name: Canada: Quebec
• Coordinates
  • Lat. (^o): 47.2469
  • Long. (^o): -71.169

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035380	Metagenome / Metatranscriptome	172	Y
F095979	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210278_11423221	F095979	N/A	AFLEAVGTRREPPTNGAAGRAALELASGVMASIQEHGERVQLAAFVSQEKAGK
Ga0210278_11423222	F035380	AGCAGG	MIPRTLVPLGSRPPAKDAPPSQRRRPTTLDERTLVPAMLPIVVLDGKSNIPRSLPLESIAARVVVPRDVNQEAYNVEENHATPVQPTDMDERIAVPQGAAPPERTDGPLIPPGDLVDLDVFMTGEVNLLTKPQTEEKTKKN