Scaffold Ga0265393_1029096

Overview

Basic Information

• Taxon OID: 3300030586
• Scaffold ID: Ga0265393_1029096
• Source Dataset Name: Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO144-ARE041SO (Eukaryote Community Metatranscriptome) (v2)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 894
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location

• Location Name: Canada: Quebec
• Coordinates
  • Lat. (^o): 47.2937
  • Long. (^o): -71.1771

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051612	Metagenome / Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265393_10290961	F051612	GGA	MYEKQADVQPAYYRTADSSTVRVYMESGSSYMAVKEGDTVHFLVTQTKGPNYLKLCNEIVLPSDPENSIKLYTEHTNNLYSKINLSLASDSGVLSEHAQYIPQLRASILSQPLLDNSPFYRGVDLSDKETDQMEKLGTFFIPSFTSTSIDRQKAYDKSALVVIDTTYMCKYGCSITERLSNYHSAEKEVLFACYSAFRLSRIEKVNSKTIVSLFLDDMNSSADKIGCSVDPV