Scaffold Ga0311355_11731611

Overview

Basic Information

• Taxon OID: 3300030580
• Scaffold ID: Ga0311355_11731611
• Source Dataset Name: II_Palsa_N1 coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 532
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae → Algoriphagus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3535
  • Long. (^o): 19.0473
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002536	Metagenome / Metatranscriptome	551	Y
F007187	Metagenome / Metatranscriptome	356	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311355_117316111	F002536	GAG	MPVDFALVGHQETWRAAADVLAILRGPHHPPIPDDEVPHILPWIPPRAVCHIEARSVLGAKVDGLYIDSFIPPDRLDPSFLRENL
Ga0311355_117316112	F007187	N/A	ALDAQRFDDKVYALHLEVMTTLAQMLARDDKDCGCELCHGGCVKPMLPNVGLTSSELRGASLQHYLRTLDALGLPGEMTLAWVSQLPV