Scaffold Ga0307512_10000878

Overview

Basic Information

• Taxon OID: 3300030522
• Scaffold ID: Ga0307512_10000878
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44336
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (43.94%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 45.6996
  • Long. (^o): -121.669

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004778	Metagenome	423	Y
F008227	Metagenome	336	Y
F048690	Metagenome	147	Y
F078047	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307512_1000087813	F004778	N/A	VLDRFELTDGCLLGITTGNASLNYSMTPELQWTLEASGIEWPALRNHIPCMAHVIQLALGSFMSSLDVKRRTKSWEAHERDQQFGENESMDIGKSQRLQKKGNARINKRSIQGHRQKSW
Ga0307512_100008782	F008227	N/A	MDTQPPPAGESGSNTGRLAGATSNTELLGTQKERRHKLVHRDAANVATKHLTQDAHLKIVRKTGSSKIKKQHAVGCRYILIVANGGQLSE
Ga0307512_1000087855	F078047	GGA	MICVVGGYFSGTLEGGRMGDNSEFFDAVLGLFLVFCLFHHYIIHIHA
Ga0307512_100008788	F048690	GGA	MLKVMDNMEASCVFYVKVGMFTHLEQSKISLLTVNKSGTRTLTVQHDMIVSIIFMQYPWDYLRHTSADVLSLEQRIIDI