NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311372_11175430

Scaffold Ga0311372_11175430


Overview

Basic Information
Taxon OID3300030520 Open in IMG/M
Scaffold IDGa0311372_11175430 Open in IMG/M
Source Dataset NameIII_Palsa_N2 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)986
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047459Metagenome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0311372_111754302F047459GGCGGMRVSLNNVWLTNDGTTDLQSWTDAHDVLINGQQVVQDAQFLRAVAAQPLARGNAVNVLQFSVTRQHAMVADAAAYVLTAFGVFPPSGSVQIVCGASGENVITCAFSAVLQEMPKCTFRGARSDTTFVLRGGLITTSAPLAANGVDGGAFGDVYAYPAGG
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