NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268253_10264633

Scaffold Ga0268253_10264633


Overview

Basic Information
Taxon OID3300030514 Open in IMG/M
Scaffold IDGa0268253_10264633 Open in IMG/M
Source Dataset NameAgave microbial communities from Guanajuato, Mexico - Mg.Ma.rz (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)583
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameGuanajuato, Mexico
CoordinatesLat. (o)21.0936Long. (o)-100.2988Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011905Metagenome / Metatranscriptome286Y
F104354Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0268253_102646331F011905N/AFMLALPLIGWVLEELARRADERRPGSGAGRWLRQGSDIAHGMGRGPLSSRLRAARR
Ga0268253_102646332F104354GGAGGMRAAPRIGSGLEGWRRLAVVAALADAVVLFGYGVARGDRESLGFAVVMLVGLGLLRVGRGLLGLLVLGALFVNIQLWMLPAANGNATYRVGLVDLLIPGALVAFSLAGLIGVVAAVVHL

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