Scaffold Ga0268242_1000400

Overview

Basic Information

• Taxon OID: 3300030513
• Scaffold ID: Ga0268242_1000400
• Source Dataset Name: Bulk soil microbial communities from Mexico - San Felipe (SF) metaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7550
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location

• Location Name: Mexico: San Luis Potosi
• Coordinates
  • Lat. (^o): 21.766
  • Long. (^o): -100.163

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014784	Metagenome / Metatranscriptome	260	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268242_10004003	F014784	GGAG	MDQNLGEREARLREFFGLGAGVRLAGEGAAAPAAAPGTNGGLEHFNVEWHLVPSAEALPLDDAYFRKLYPAASQDFERGRDHAASFRERLTEGHRRHQGHVVGVETTQKPRYLPGNRQFYGTAYGHDPTADPFAPYLGRAGMMNGTRYEHNYLSLREFVRVVNEDWRQRGLLPAGYRVTVCPPAVFNLVGTIFHPEWSQTETLELGFYRDQHGNATCYAVGPNGPGDFSYVTEIEGETEWALAGFRVALVPD