NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311370_12251407

Scaffold Ga0311370_12251407


Overview

Basic Information
Taxon OID3300030503 Open in IMG/M
Scaffold IDGa0311370_12251407 Open in IMG/M
Source Dataset NameIII_Palsa_E3 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)533
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003969Metagenome / Metatranscriptome459Y
F072545Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0311370_122514071F072545GGAGGMSDNDNGCGAAVAEVTASTELAKDFTLFQIEESLLLLAESAEEEGLTPEIERALTVYLEGAAE
Ga0311370_122514072F003969N/ANPTQSRNAAPTGLTSRNMAARFTSMRSVLGVPKYGDILGRHGYREVTNIPSLEKARDVYRMLVDAFRVHFGEAKRTLGNAEYVKILSELRLNPKAKLNPEQAVRVFNRMEETLNVRQ

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