NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268259_10160772

Scaffold Ga0268259_10160772


Overview

Basic Information
Taxon OID3300030499 Open in IMG/M
Scaffold IDGa0268259_10160772 Open in IMG/M
Source Dataset NameAgave microbial communities from Guanajuato, Mexico - As.Ma.rz (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)539
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameGuanajuato, Mexico
CoordinatesLat. (o)21.0936Long. (o)-100.2988Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061624Metagenome / Metatranscriptome131Y
F064462Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0268259_101607721F061624N/ALVEDALPALDPVRRRIPGADDEGAFLAWAYTLAVDEALDRLAARGLLTPPATAVTAVRVTDPVLAGAAV
Ga0268259_101607722F064462AGGAGGMSADPVVIAILVVLATLAAPLAADWRRRLATRRFDAVYERNLLRRTGRG

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