Scaffold Ga0268240_10002726

Overview

Basic Information

• Taxon OID: 3300030496
• Scaffold ID: Ga0268240_10002726
• Source Dataset Name: Bulk soil microbial communities from Mexico - Penjamo (Pe) metaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2362
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location

• Location Name: Mexico: Penjamo
• Coordinates
  • Lat. (^o): 20.686
  • Long. (^o): -101.875

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030072	Metagenome / Metatranscriptome	186	Y
F069981	Metagenome	123	Y
F079767	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268240_100027263	F030072	N/A	MRDIDWPLAITLAVVFVVMSVFRWRYFRSVARRRAQRRERDEPSP
Ga0268240_100027264	F069981	N/A	MLPLCARAQGAEDDSTRYLNISPALGFHYGVPLKLSVAAGGLFDFRGRYDDGIIAMGEMGQGGAEVSMGYFRMMRFGQGFDVRFAGLRTSSEPHNAAPGTTYLGAEAHVMFLLGIGGRVGWFRRVSSYSGENTYDNVGSFRVSIGL
Ga0268240_100027265	F079767	GGA	MTDPRPPLPTSSTLRPALALLAGLGVTVLIVFFGVTISTLAALRGVDPKSYVAPGWTYPTHMLISFFGAMAGGFATARITTGHTLFTTLVLALILLMSALTPVLRHAPSAPGQPAWYALSLVIASPLGALLGGLLERRRSRAPSPPAG