Scaffold Ga0311353_10377876

Overview

Basic Information

• Taxon OID: 3300030399
• Scaffold ID: Ga0311353_10377876
• Source Dataset Name: II_Palsa_E2 coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1280
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3535
  • Long. (^o): 19.0473
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019749	Metagenome	228	Y
F090751	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311353_103778761	F019749	N/A	NYEWTPQADKLLIELCAEWGAAKAKRIMGRRIQECRPADTAPRPDSVRKAVEHRMAKLGISTGQERRKPDMRKAKRWTETQTAALLGALGADATIESIAVRTGHSVKSVRAKIARLDYQIHEINGFEASTVDSLAALLRVTPRQIRRWKERGWMETKDRRITEECLGQFLRAHPDQIQFDSLPREDQIFLVDLGFPCREAATFKKNVREILDGIGRQRKPRRLAQGVNPTGTDAGQDEDDTNGDEGSPLTVGTSA
Ga0311353_103778762	F090751	N/A	DSTAQQVLDAVRGVSEPEWSTLLHGFSDLIAFSLWIELVLDIEGPTSGLVSNELAERYGGFSLSRGTKGSKEVVRALNEWVIEHSLAIADQKQMLAALSFHISHHPAYPAMRNYALHCHDVWPHECPRRLPSFEEWRQAADAYFEE