NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311360_10441195

Scaffold Ga0311360_10441195


Overview

Basic Information
Taxon OID3300030339 Open in IMG/M
Scaffold IDGa0311360_10441195 Open in IMG/M
Source Dataset NameIII_Bog_N1 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1046
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001133Metagenome / Metatranscriptome767Y
F026357Metagenome / Metatranscriptome198Y

Sequences

Protein IDFamilyRBSSequence
Ga0311360_104411952F001133GAGMWIEKLSDGVLELDTPIGPRYLQLNLLQRVYLMWTFRNFFSLPQQVLRPWERRLIDDLWSENRFVSMPATGAPDKPVIGRIERRAPLQAEVLPIRTAPLRKPPVRQPISGSNSVVAEQSREAASA
Ga0311360_104411953F026357N/ASSTGIFLYTESGMKAGSKLELVIMLPPGLGLGPGGWTLCEASVVRVEESEGKGMGVAATIDRIDFLPEIS

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