Scaffold Ga0247826_11010585

Overview

Basic Information

• Taxon OID: 3300030336
• Scaffold ID: Ga0247826_11010585
• Source Dataset Name: Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 661
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina → Methanosarcina barkeri (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From Agricultural Site In Penn Yan, New York, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.673
  • Long. (^o): -77.032
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F100013	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247826_110105851	F100013	N/A	TSDGQEAFTSLYRVGLLGYVQHDRVRGEWRQRFLRPGEATLETNGVLPRATHYLIHPVLFDVIARNNTAFLQRIDRVNIVGYDRPWRESGPVERTLDLRQCCVLKADVQGFGALMRSGLDGPVRAAFEEAAKRWAPPAAIVEIRAGDAALIAADDPVALAQTARHLMDAVYQAPGHPRLRIALHYGPVQTDRRGANQRTVIVGGDAILCAARVEPVVEPG