NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247826_10766762

Scaffold Ga0247826_10766762


Overview

Basic Information
Taxon OID3300030336 Open in IMG/M
Scaffold IDGa0247826_10766762 Open in IMG/M
Source Dataset NameSoil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)753
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From Agricultural Site In Penn Yan, New York, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.673Long. (o)-77.032Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005471Metagenome399Y
F091478Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0247826_107667622F091478AGGAMATCDVLYFDPTQVGQPRRDRAGHPLGPASDGWQPCTAPGQAWTDPDLVLRWICTRHRRQLIALHAAGLASQVRWQRPGLATGPAPSREATS
Ga0247826_107667623F005471AGGAGGMHSQPYPTRPTPEPALHLLGGIWIASCPTCGFQLTTARTQPRCERRAARRLCPVCYQDGA

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