Scaffold Ga0311349_11245715

Overview

Basic Information

• Taxon OID: 3300030294
• Scaffold ID: Ga0311349_11245715
• Source Dataset Name: II_Fen_E3 coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 694
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales → Acidimicrobiales bacterium mtb01 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0469
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011177	Metagenome / Metatranscriptome	294	Y
F033108	Metagenome / Metatranscriptome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311349_112457151	F011177	AGGTGG	VTEVLLPAEAARRLGVATRVIVQAMYEKRLPRVKLEDGTLGVPAEALDAFQVPSG
Ga0311349_112457152	F033108	AGCAG	VSTHDPTDDPVPRIIVLDLDETFRVLEALEDARLALRDRGAAPGLQDELATVIRILHGKLGLDEGGVL