NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302217_10085502

Scaffold Ga0302217_10085502


Overview

Basic Information
Taxon OID3300030052 Open in IMG/M
Scaffold IDGa0302217_10085502 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_N3_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)709
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022542Metagenome / Metatranscriptome214Y
F044216Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0302217_100855021F044216N/AGHSYVDVDALARIMNAAVRVEPGRVILTVPAAEAGAKPERSTPGLSKDFAKASISQLAEMREWKAAIASVIRSGVAAGNWLGPVLHDHRARAEAALSQTSLAAKTESDQKALQLLKNELTNLGEWDSNTQATIHSLNAEQSVNPAATQNDPLLAKISECGNFLNGMLVDGEFADSPSCH
Ga0302217_100855022F022542GAGGMNKKEINSPKLTANFLFWVCGVGGVLVIGLLGHYIW
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